PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018921.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 713aa    MW: 80018.1 Da    PI: 5.959
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018921.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3651.1e-1113397062370
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +lL+ecAeav+s ++++a++lL+r+++++sp+gd++qRla+yf+ +L+arla+   ++ ++ l +       ++e l+a+++++ ++P+ k+ h+ a
  Pbr018921.1 339 CKLLTECAEAVASYNQQAANELLKRIRQHSSPYGDSTQRLAHYFADGLEARLAGaRNPSYCRPLMMHIP----ETEILKAYQVYVTACPFKKMVHFFA 432
                  589***************************************************444444444444333....799********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I++ +e+++r+HiiDf+is GlQWp+L+q+L+++++gpp+l iT ++ p++g   +e +eetg+rL+k++e+ +vpfe+nv +ak++e+++le++
  Pbr018921.1 433 NRTIMKTAEKATRLHIIDFGISFGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGfrPAEIIEETGRRLTKYCEKYNVPFEYNV-IAKKWETIRLEDI 529
                  ******************************************************9*99*************************9.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  r++++E+++Vn++++l++++de+v  +++rd++L+l+k+++P+++ +   +  +n++ F++rf +al ++ a+fd +ea++pre+e+r+  Er+++gr
  Pbr018921.1 530 RIDRNEVTVVNCMFRLKQIPDETVMANNPRDAILNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFHAFFDIYEATVPREDEQRMLFERAVFGR 627
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                  +i+nvvaceg+er+er et+++W++r  + GFk++pl+    +++k+l + ++    + +e++ +++++gWk+r ++++
  Pbr018921.1 628 DIMNVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLQKVKTLSKVMGyHSDFLIEDDGQWMLQGWKGRIVLAL 706
                  ************************************************999988888*****************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.122312689IPR005202Transcription factor GRAS
PfamPF035143.7E-109339706IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MDTLYVERFS APIEGFELGD GSNSVCCDEN LAGGFKENHE STNPNSLPSN FDHPSVSSTS  60
LSAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACMLQ QSLALKMAEN SFHDALNSEN  120
PPLLNQPSFS VYQSFEDSDV GFHSSDGSVA SFYSSNGSIS ANSGCVWDVS QPCHVQSSLF  180
EPISDTLFVS DSFSVEEGIK FVPKQSCEII DPERDQLMPS GSDQWPRGPC TLIGDLASKN  240
GYNSTNGSKG KKNHRREDGY DTEEGRRNKQ SAAACDSSDL QEIYDKVLQS VNHEPDSCSH  300
DESSKTKGNR TLQHKEQSKG SKTSRAKKQN SNGKVVDLCK LLTECAEAVA SYNQQAANEL  360
LKRIRQHSSP YGDSTQRLAH YFADGLEARL AGARNPSYCR PLMMHIPETE ILKAYQVYVT  420
ACPFKKMVHF FANRTIMKTA EKATRLHIID FGISFGLQWP CLIQSLSEKT GGPPKLCITL  480
IEVPQPGFRP AEIIEETGRR LTKYCEKYNV PFEYNVIAKK WETIRLEDIR IDRNEVTVVN  540
CMFRLKQIPD ETVMANNPRD AILNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFH  600
AFFDIYEATV PREDEQRMLF ERAVFGRDIM NVVACEGQER VERPETYKQW QARYARIGFK  660
QLPLDRALLQ KVKTLSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALNALK PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-443427108375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375907.10.0PREDICTED: scarecrow-like protein 30
TrEMBLM5W7A20.0M5W7A2_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-174SCARECROW-like 14